Discovery of Nanomolar DCAF1 Small Molecule Ligands.

Publication Type:

Journal Article

Source:

J Med Chem, Volume 66, Issue 7, p.5041-5060 (2023)

Keywords:

Carrier Proteins, Humans, Ligands, Neoplasms, Ubiquitin-Protein Ligases

Abstract:

<p>DCAF1 is a substrate receptor of two distinct E3 ligases (CRL4 and EDVP), plays a critical physiological role in protein degradation, and is considered a drug target for various cancers. Antagonists of DCAF1 could be used toward the development of therapeutics for cancers and viral treatments. We used the WDR domain of DCAF1 to screen a 114-billion-compound DNA encoded library (DEL) and identified candidate compounds using similarity search and machine learning. This led to the discovery of a compound (Z1391232269) with an SPR of 11 μM. Structure-guided hit optimization led to the discovery of OICR-8268 () with an SPR of 38 nM and cellular target engagement with EC of 10 μM as measured by cellular thermal shift assay (CETSA). OICR-8268 is an excellent tool compound to enable the development of next-generation DCAF1 ligands toward cancer therapeutics, further investigation of DCAF1 functions in cells, and the development of DCAF1-based PROTACs.</p>

PDB: 
structural data for DCAF1-3d and DCAF1-26e were deposited in the Protein Data Bank (PDB) under the accession codes 7UFV and 8F8E,
Detector: 
EIGER2
Beamline: 
24-ID-C