Ligand bound structure of a 6-hydroxynicotinic acid 3-monooxygenase provides mechanistic insights.

Publication Type:

Journal Article

Source:

Arch Biochem Biophys, Volume 752, p.109859 (2023)

Abstract:

<p>6-Hydroxynicotinic acid 3-monooxygenase (NicC) is a bacterial enzyme involved in the degradation of nicotinic acid. This enzyme is a Class A flavin-dependent monooxygenase that catalyzes a unique decarboxylative hydroxylation. The unliganded structure of this enzyme has previously been reported and studied using steady- and transient-state kinetics to support a comprehensive kinetic mechanism. Here we report the crystal structure of the H47Q NicC variant in both a ligand-bound (solved to 2.17&nbsp;Å resolution) and unliganded (1.51&nbsp;Å resolution) form. Interestingly, in the liganded form, H47Q NicC is bound to 2-mercaptopyridine (2-MP), a contaminant present in the commercial stock of 6-mercaptopyridine-3-carboxylic acid(6-MNA), a substrate analogue. 2-MP binds weakly to H47Q NicC and is not a substrate for the enzyme. Based on kinetic and thermodynamic characterization, we have fortuitously captured a catalytically inactive H47Q NicC&bull;2-MP complex in our crystal structure. This complex reveals interesting mechanistic details about the reaction catalyzed by 6-hydroxynicotinic acid 3-monooxygenase.</p>

PDB: 
8UIQ, 8UIV
Detector: 
EIGER2
Beamline: 
24-ID-C
24-ID-E